Package index • Acutelines Datatoolbox

SOFA score

Calculate (elements) of the SOFA score

sofa_cardiovascular(): SOFA cardiovascular
sofa_cns(): SOFA CNS
sofa_coagulation(): SOFA coagulation
sofa_liver(): SOFA liver
sofa_magic_wrapper(): SOFA magic wrapper
sofa_renal(): SOFA renal
sofa_respiration(): SOFA respiration
sofa_total(): Total SOFA score

Respiration

Collection of function to clean and impute respiratory parameters

clean_fio2(): Clean FiO2
clean_spo2(): Clean SpO2
impute_fio2(): Impute FiO2
impute_pao2(): Impute PaO2 with SpO2
pfratio_imputed(): Calculate P/F-ratio
o2supply_to_fio2(): O2-supply to FiO2
spo2_to_pao2(): Convert SpO2 to PaO2

NEWS score

Calculate (elements) of the National Early Warning Score (NEWS)

news_consc(): Calculate NEWS score for Consciousness level (AVPU or GCS)
news_hr(): Calculate NEWS score for Heart Rate (HR)
news_o2supp(): Calculate NEWS score for Oxygen Supplementation (O2 supp)
news_rf(): Calculate NEWS score for Respiratory Frequency (RF)
news_sbp(): Calculate NEWS score for Systolic Blood Pressure (SBP)
news_spo2(): Calculate NEWS score for Oxygen Saturation (SpO2)
news_temp(): Calculate NEWS score for Temperature (Temp)
news_total(): Calculate total NEWS score from individual components

Postprocessing functions

Functions to postprocess and clean data

clean_lab(): Clean laboratory variables by removing '<' and '>' characters and converting to numeric Cleans all columns starting with "lab_" (per Acutelines standard)
normalize_decimal_format(): Normalize decimal format in a data frame Interprets both "." and "," as decimal indicators

Helper functions

cbrt(): Calculate cube root of x